exRNAdisease

Entry Detail

---



General Information

Database ID: exR0355478 RNA Name: LINC00265 RNA Type: lncRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 39733430 End Site(bp): 39793092 External Links: ENSG00000188185

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADCY9 chr16 3953387 4116442 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7a-5p chr9 94175962 94175983 + hsa-let-7b-5p chr22 46113691 46113712 + hsa-let-7c-5p chr21 16539838 16539859 + hsa-let-7d-5p chr9 94178841 94178862 + hsa-let-7e-5p chr19 51692793 51692814 + hsa-let-7f-5p chrX 53557246 53557267 - hsa-miR-98-5p chrX 53556299 53556320 - hsa-let-7g-5p chr3 52268336 52268357 - hsa-let-7i-5p chr12 62603691 62603712 + hsa-miR-34b-5p chr11 111512950 111512972 + hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-556-5p chr1 162342561 162342582 + hsa-miR-1294 chr5 154347153 154347174 + hsa-miR-449c-5p chr5 55172313 55172337 - hsa-miR-2682-5p chr1 98045307 98045329 - hsa-miR-4458 chr5 8460933 8460951 + hsa-miR-4500 chr13 87618671 87618687 - hsa-miR-5009-3p chr15 89883949 89883970 - hsa-miR-873-3p chr9 28888889 28888910 - hsa-miR-6884-5p chr17 40026383 40026404 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA