exRNAdisease

Entry Detail

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General Information

Database ID: exR0355666 RNA Name: LINC00641 RNA Type: lncRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 21200079 End Site(bp): 21206900 External Links: ENSG00000258441

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1-3p chr18 21829015 21829036 - hsa-miR-206 chr6 52144401 52144422 + hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-362-5p chrX 50008968 50008991 + hsa-miR-378a-3p chr5 149732867 149732888 + hsa-miR-323a-3p chr14 101025782 101025802 + hsa-miR-422a chr15 63870989 63871010 - hsa-miR-613 chr12 12764709 12764728 + hsa-miR-641 chr19 40282603 40282626 - hsa-miR-653-5p chr7 93482823 93482843 - hsa-miR-660-5p chrX 50013256 50013277 + hsa-miR-501-3p chrX 50009772 50009793 + hsa-miR-502-3p chrX 50014649 50014670 + hsa-miR-320b chr1 224257049 224257070 - hsa-miR-320c chr18 24321716 24321735 + hsa-miR-320d chr13 40727828 40727846 - hsa-miR-378b chr3 10330262 10330280 + hsa-miR-500b-5p chrX 50010682 50010699 + hsa-miR-3617-5p chr20 45705150 45705171 - hsa-miR-378d chr4 5923279 5923298 - hsa-miR-378e chr5 170028545 170028563 + hsa-miR-378f chr1 23929121 23929140 + hsa-miR-4429 chr2 11540652 11540671 - hsa-miR-378h chr5 154829466 154829486 + hsa-miR-378i chr22 41923271 41923291 - hsa-miR-212-5p chr17 2050328 2050350 - hsa-miR-873-3p chr9 28888889 28888910 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA