Entry Detail



General Information

Database ID:exR0355679
RNA Name:LINC00665
RNA Type:lncRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):36313067End Site(bp):36331770
External Links:ENSG00000232677



Disease Information

Disease Name:Rheumatoid Arthritis
Disease Category:Musculoskeletal Diseases
MeSH ID:D001172
Type:Diseases Category/Musculoskeletal Diseases
Alias:Arthritis, Rheumatoid//Rheumatoid Arthritis



Expression Detail

GEO ID:GSE94519
Description:Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:Disease vs Control
Case Disease Type:Rheumatoid Arthritis
Case Disease SubType:NA
Case Sample:Rheumatoid Arthritis
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGPAT3
chr21
43865223
43987592
+
ADCY1
chr7
45574140
45723116
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-34a-5p
chr1
9151735
9151756
-
hsa-miR-214-3p
chr1
172138816
172138837
-
hsa-miR-224-5p
chrX
151958628
151958652
-
hsa-miR-34c-5p
chr11
111513451
111513473
+
hsa-miR-449a
chr5
55170586
55170607
-
hsa-miR-449b-5p
chr5
55170706
55170727
-
hsa-miR-542-3p
chrX
134541364
134541385
-
hsa-miR-665
chr14
100875075
100875094
+
hsa-miR-761
chr1
51836375
51836396
-
hsa-miR-3179
chr16
18411905
18411926
-
hsa-miR-3619-5p
chr22
46091059
46091080
+
hsa-miR-642b-3p
chr19
45674941
45674962
-
hsa-miR-642a-3p
chr19
45674978
45674999
+
hsa-miR-873-3p
chr9
28888889
28888910
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC020928.1
chr19
36773112
36777078
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:GSE94519
Sample Source:Blood
Source Fraction:Serum
Platform:GPL20115
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1224
Sample treatment protocol:All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA