exRNAdisease

Entry Detail

---



General Information

Database ID: exR0355745 RNA Name: MCM3AP-AS1 RNA Type: lncRNA Chromosome: chr21 Starnd: + Coordinate: Start Site(bp): 46229196 End Site(bp): 46259390 External Links: ENSG00000215424

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-520d-5p chr19 53720111 53720130 + hsa-miR-6849-5p chr8 144400318 144400340 - hsa-miR-642b-3p chr19 45674941 45674962 - hsa-miR-138-5p chr16 56858527 56858549 + hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-204-5p chr9 70810031 70810052 - hsa-miR-642a-3p chr19 45674978 45674999 + hsa-miR-1323 chr19 53671978 53671999 + hsa-miR-19b-3p chr13 91351245 91351267 + hsa-miR-6783-3p chr17 44934618 44934639 - hsa-miR-15a-5p chr13 50049167 50049188 - hsa-miR-4524a-5p chr17 69099606 69099627 - hsa-miR-425-5p chr3 49020199 49020221 - hsa-miR-194-5p chr11 64891404 64891425 - hsa-miR-548o-3p chr20 38516607 38516628 + hsa-miR-5581-3p chr1 37500935 37500956 - hsa-miR-374c-3p chrX 74218587 74218608 + hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-5586-5p chr14 59646999 59647020 - hsa-miR-130a-5p chr11 57641212 57641233 + hsa-miR-383-5p chr8 14853483 14853504 - hsa-miR-4524b-5p chr17 69099570 69099590 + hsa-miR-1343-3p chr11 34941888 34941909 + hsa-miR-6838-5p chr7 44073407 44073428 - hsa-miR-524-5p chr19 53711017 53711038 + hsa-miR-380-3p chr14 101025056 101025077 + hsa-miR-211-5p chr15 31065095 31065116 - hsa-miR-23a-3p chr19 13836595 13836615 - hsa-miR-205-5p chr1 209432166 209432187 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA