exRNAdisease

General Information

Database ID:

exR0355808

RNA Name:

NEAT1

RNA Type:

lncRNA

Chromosome:

chr11

Starnd:

Coordinate:

Start Site(bp):

65422774

End Site(bp):

65445540

External Links:

Disease Information

Disease Name:	Rheumatoid Arthritis
Disease Category:	Musculoskeletal Diseases
MeSH ID:	D001172
Type:	Diseases Category/Musculoskeletal Diseases
Alias:	Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID:	GSE94519
Description:	Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:	Disease vs Control
Case Disease Type:	Rheumatoid Arthritis
Case Disease SubType:	NA
Case Sample:	Rheumatoid Arthritis
Control Sample:	Healthy
Number of Case:	3
Number of Control:	3
Number of Samples:	6

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AAMP	chr2	218264123	218270257	-
ABL1	chr9	130713016	130887675	+
ABRACL	chr6	139028745	139043302	+
AC010323.1	chr19	8308283	8321379	-
AC011455.2	chr19	38915404	38949855	-
ACIN1	chr14	23058564	23095614	-
ACSL4	chrX	109624244	109733403	-
ACTA2	chr10	88935074	88991339	-
ACTB	chr7	5527148	5563784	-
ACTG1	chr17	81509971	81523847	-
ACVR1B	chr12	51951699	51997078	+
ACVR2B	chr3	38453890	38493142	+
ADGRL2	chr1	81306160	81992436	+
AEN	chr15	88621337	88632281	+
AFDN	chr6	167826922	167972023	+
AGFG1	chr2	227472152	227561214	+
AIF1L	chr9	131096476	131123152	+
AKT2	chr19	40230317	40285536	-
AL121845.3	chr20	63708864	63739103	+
ABHD11	chr7	73736094	73738867	-
AC010522.1	chr19	57819719	57858941	+
AC107871.1	chr15	68184032	68229718	-
ADAM9	chr8	38996869	39105261	+
AGO4	chr1	35808016	35857890	+
AL021546.1	chr12	120438198	120460006	+
AL121845.2	chr20	63738270	63740398	+
AL162231.3	chr9	34646645	34657113	+
AL360181.3	chr10	133380017	133420271	+
AL365205.1	chr6	41780349	41790141	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-2114-3p	chrX	150228052	150228072	+
hsa-miR-3126-5p	chr2	69103691	69103712	+
hsa-miR-485-5p	chr14	101055427	101055448	+
hsa-miR-205-5p	chr1	209432166	209432187	+
hsa-miR-4756-5p	chr20	54068452	54068474	-
hsa-miR-4677-3p	chr1	243346225	243346246	+
hsa-miR-1197	chr14	101025620	101025640	+
hsa-miR-513a-5p	chrX	147213538	147213555	-
hsa-miR-4465	chr6	140683855	140683876	+
hsa-miR-3187-3p	chr19	813627	813646	+
hsa-miR-520d-3p	chr19	53720149	53720170	+
hsa-miR-556-5p	chr1	162342561	162342582	+
hsa-miR-5581-3p	chr1	37500935	37500956	-
hsa-miR-5009-3p	chr15	89883949	89883970	-
hsa-miR-147a	chr9	120244985	120245004	-
hsa-miR-296-5p	chr20	58817661	58817681	-
hsa-miR-1287-5p	chr10	98395271	98395292	-
hsa-miR-3146	chr7	19705366	19705387	-
hsa-miR-372-3p	chr19	53787931	53787953	+
hsa-miR-3614-5p	chr17	56891319	56891341	-
hsa-miR-197-3p	chr1	109598940	109598961	+
hsa-miR-506-3p	chrX	147230753	147230773	-
hsa-miR-296-3p	chr20	58817626	58817647	-
hsa-miR-6820-3p	chr22	37967603	37967624	+
hsa-miR-605-3p	chr10	51299623	51299644	+
hsa-miR-200c-3p	chr12	6963742	6963764	+
hsa-miR-212-5p	chr17	2050328	2050350	-
hsa-miR-4731-5p	chr17	15251666	15251687	-
hsa-miR-944	chr3	189829975	189829996	+
hsa-miR-130a-5p	chr11	57641212	57641233	+

circRNA targets:

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC010733.2	chr2	60925909	60931610	+
AC067930.1	chr8	143579636	143580670	+
AC243964.3	chr19	44631573	44725217	-
AC245014.3	chr1	145281116	145281462	+
AD000090.1	chr19	35557956	35581954	+
AL121992.1	chr1	15586136	15603626	-

Display:

Experiment Detail

GEO ID:	GSE94519
Sample Source:	Blood
Source Fraction:	Serum
Platform:	GPL20115
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1224
Sample treatment protocol:	All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:	RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:	Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference