Entry Detail



General Information

Database ID:exR0355863
RNA Name:PINK1-AS
RNA Type:lncRNA
Chromosome:chr1
Starnd:-
Coordinate:
Start Site(bp):20642657End Site(bp):20652193
External Links:ENSG00000117242



Disease Information

Disease Name:Rheumatoid Arthritis
Disease Category:Musculoskeletal Diseases
MeSH ID:D001172
Type:Diseases Category/Musculoskeletal Diseases
Alias:Arthritis, Rheumatoid//Rheumatoid Arthritis



Expression Detail

GEO ID:GSE94519
Description:Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:Disease vs Control
Case Disease Type:Rheumatoid Arthritis
Case Disease SubType:NA
Case Sample:Rheumatoid Arthritis
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC104452.1
chr3
49416777
49429314
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-141-3p
chr12
6964155
6964176
+
hsa-miR-134-5p
chr14
101054694
101054715
+
hsa-miR-200a-3p
chr1
1167916
1167937
+
hsa-miR-588
chr6
126484646
126484666
+
hsa-miR-3118
chr15
21843793
21843815
+
hsa-miR-4701-5p
chr12
48772014
48772035
-
hsa-miR-4766-3p
chr22
40813893
40813913
-
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE94519
Sample Source:Blood
Source Fraction:Serum
Platform:GPL20115
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1224
Sample treatment protocol:All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA