exRNAdisease

Entry Detail

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General Information

Database ID: exR0355936 RNA Name: SCARNA9 RNA Type: lncRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 93721513 End Site(bp): 93721865 External Links: ENSG00000254911

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTG1 chr17 81509971 81523847 - ABCB5 chr7 20615207 20777038 + AKIRIN1 chr1 38991276 39006059 + ALDH3A2 chr17 19648136 19685760 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-3p chr1 172144554 172144575 - hsa-miR-210-3p chr11 568112 568133 - hsa-miR-216a-5p chr2 55989020 55989041 - hsa-miR-376a-3p chr14 101040825 101040845 + hsa-miR-379-5p chr14 101022071 101022091 + hsa-miR-151a-3p chr8 140732587 140732607 - hsa-miR-329-3p chr14 101026834 101026855 + hsa-miR-376b-3p chr14 101040497 101040518 + hsa-miR-524-5p chr19 53711017 53711038 + hsa-miR-520d-5p chr19 53720111 53720130 + hsa-miR-199b-3p chr9 128244745 128244766 - hsa-miR-362-3p chrX 50009005 50009026 + hsa-miR-3129-5p chr2 189133082 189133103 - hsa-miR-3529-5p chr15 88611894 88611915 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA