exRNAdisease

Entry Detail

---



General Information

Database ID: exR0355973 RNA Name: SNHG12 RNA Type: lncRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 28578538 End Site(bp): 28583132 External Links: ENSG00000197989

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC118553.2 chr1 99970011 100083321 + AC138969.1 chr16 16317444 16350590 + AKR1B1 chr7 134442356 134459284 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-15a-5p chr13 50049167 50049188 - hsa-miR-16-5p chr3 160404754 160404775 + hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-199b-5p chr9 128244783 128244805 - hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-494-3p chr14 101029681 101029702 + hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-503-5p chrX 134546371 134546393 - hsa-miR-620 chr12 116148575 116148594 - hsa-miR-129-1-3p chr7 128207920 128207941 + hsa-miR-129-2-3p chr11 43581450 43581471 + hsa-miR-320b chr1 224257049 224257070 - hsa-miR-320c chr18 24321716 24321735 + hsa-miR-1301-3p chr2 25328651 25328674 - hsa-miR-1270 chr19 20399320 20399342 - hsa-miR-320d chr13 40727828 40727846 - hsa-miR-4429 chr2 11540652 11540671 - hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-6512-3p chr2 177313811 177313832 - hsa-miR-6720-5p chr6 1390359 1390381 - hsa-miR-6838-5p chr7 44073407 44073428 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA