Entry Detail



General Information

Database ID:exR0355978
RNA Name:SNHG6
RNA Type:lncRNA
Chromosome:chr8
Starnd:-
Coordinate:
Start Site(bp):66921684End Site(bp):66926398
External Links:ENSG00000245910



Disease Information

Disease Name:Rheumatoid Arthritis
Disease Category:Musculoskeletal Diseases
MeSH ID:D001172
Type:Diseases Category/Musculoskeletal Diseases
Alias:Arthritis, Rheumatoid//Rheumatoid Arthritis



Expression Detail

GEO ID:GSE94519
Description:Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:Disease vs Control
Case Disease Type:Rheumatoid Arthritis
Case Disease SubType:NA
Case Sample:Rheumatoid Arthritis
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010323.1
chr19
8308283
8321379
-
AC010422.3
chr19
12643831
12648397
-
AC010463.1
chr19
17267418
17282966
+
ACTB
chr7
5527148
5563784
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-26a-5p
chr3
37969413
37969434
+
hsa-miR-26b-5p
chr2
218402657
218402677
+
hsa-miR-101-3p
chr1
65058442
65058462
-
hsa-miR-485-3p
chr14
101055464
101055485
+
hsa-miR-944
chr3
189829975
189829996
+
hsa-miR-1297
chr13
54311981
54311997
-
hsa-miR-1278
chr1
193136552
193136573
+
hsa-miR-3924
chr10
57304489
57304510
-
hsa-miR-4465
chr6
140683855
140683876
+
hsa-miR-539-3p
chr14
101047369
101047390
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC021078.1
chr5
149494314
149504670
-
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:GSE94519
Sample Source:Blood
Source Fraction:Serum
Platform:GPL20115
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1224
Sample treatment protocol:All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA