exRNAdisease

Entry Detail

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General Information

Database ID: exR0355979 RNA Name: SNHG7 RNA Type: lncRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 136721366 End Site(bp): 136728184 External Links: ENSG00000233016

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005670.2 chr17 46923133 47049932 + AC245033.1 chr15 82536788 82573194 - ACO2 chr22 41469117 41528989 + AD000671.1 chr19 35745678 35754519 + ADARB1 chr21 45073853 45226560 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-34a-5p chr1 9151735 9151756 - hsa-miR-181a-5p chr1 198859108 198859130 - hsa-miR-181b-5p chr9 124693725 124693747 + hsa-miR-181c-5p chr19 13874725 13874746 + hsa-miR-122-5p chr18 58451088 58451109 + hsa-miR-9-5p chr5 88666902 88666924 - hsa-miR-186-5p chr1 71067681 71067702 - hsa-miR-34b-5p chr11 111512950 111512972 + hsa-miR-34c-5p chr11 111513451 111513473 + hsa-miR-342-3p chr14 100109715 100109737 + hsa-miR-331-3p chr12 95308480 95308500 + hsa-miR-449a chr5 55170586 55170607 - hsa-miR-181d-5p chr19 13874910 13874932 + hsa-miR-625-5p chr14 65471116 65471136 + hsa-miR-449b-5p chr5 55170706 55170727 - hsa-miR-653-5p chr7 93482823 93482843 - hsa-miR-425-5p chr3 49020199 49020221 - hsa-miR-214-5p chr1 172138857 172138878 - hsa-miR-574-5p chr4 38868056 38868078 + hsa-miR-543 chr14 101032033 101032054 + hsa-miR-216b-5p chr2 56000764 56000785 - hsa-miR-941 chr20 63919551 63919573 + hsa-miR-449c-5p chr5 55172313 55172337 - hsa-miR-2682-5p chr1 98045307 98045329 - hsa-miR-3186-3p chr17 81451116 81451136 - hsa-miR-4262 chr2 11836943 11836959 - hsa-miR-4436a chr2 88812425 88812445 + hsa-miR-5000-3p chr2 75090873 75090894 + hsa-miR-506-5p chrX 147230788 147230809 - hsa-miR-579-5p chr5 32394430 32394451 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020663.1 chr16 4730115 4752565 - AC020978.7 chr16 68224713 68227734 + AC074183.1 chr7 84939349 84940245 - AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA