exRNAdisease

Entry Detail

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General Information

Database ID: exR0355980 RNA Name: SNHG8 RNA Type: lncRNA Chromosome: chr4 Starnd: + Coordinate: Start Site(bp): 118278709 End Site(bp): 118285316 External Links: ENSG00000269893

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC048338.1 chr12 122207779 122266423 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - AFG1L chr6 108294991 108526796 + ALDOA chr16 30064164 30070457 + AC024592.3 chr19 5866171 5903787 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-149-5p chr2 240456015 240456037 + hsa-miR-154-5p chr14 101059769 101059790 + hsa-miR-384 chrX 76919285 76919304 - hsa-miR-494-3p chr14 101029681 101029702 + hsa-miR-522-3p chr19 53751264 53751285 + hsa-miR-588 chr6 126484646 126484666 + hsa-miR-620 chr12 116148575 116148594 - hsa-miR-411-5p chr14 101023340 101023360 + hsa-miR-656-3p chr14 101066766 101066786 + hsa-miR-542-3p chrX 134541364 134541385 - hsa-miR-425-5p chr3 49020199 49020221 - hsa-miR-371a-5p chr19 53787680 53787699 + hsa-miR-1270 chr19 20399320 20399342 - hsa-miR-224-3p chrX 151958584 151958606 - hsa-miR-4701-5p chr12 48772014 48772035 - hsa-miR-506-5p chrX 147230788 147230809 - hsa-miR-873-3p chr9 28888889 28888910 - hsa-miR-7151-5p chr10 67403388 67403410 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC068205.2 chr11 43578889 43840030 + AC139149.1 chr17 81514047 81527776 + AL133215.2 chr10 101060029 101061005 - Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA