exRNAdisease

Entry Detail

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General Information

Database ID: exR0356092 RNA Name: TUG1 RNA Type: lncRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 30969245 End Site(bp): 30979395 External Links: ENSG00000253352

Disease Information

Disease Name: Rheumatoid Arthritis Disease Category: Musculoskeletal Diseases MeSH ID: D001172 Type: Diseases Category/Musculoskeletal Diseases Alias: Arthritis, Rheumatoid//Rheumatoid Arthritis

Expression Detail

GEO ID: GSE94519 Description: Long noncoding RNAs expression profile in patients with rheumatoid arthritis Experimental Design: Disease vs Control Case Disease Type: Rheumatoid Arthritis Case Disease SubType: NA Case Sample: Rheumatoid Arthritis Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005258.1 chr19 2269525 2341172 + ACOT7 chr1 6264269 6394391 - ADNP chr20 50888916 50931437 - AGO1 chr1 35869808 35930532 + AC090004.1 chr3 14135217 14148252 + ADH5 chr4 99070978 99088801 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-590-5p chr7 74191213 74191234 + hsa-miR-3681-3p chr2 12199174 12199195 + hsa-miR-7151-5p chr10 67403388 67403410 - hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-9-3p chr15 89368071 89368092 + hsa-miR-362-5p chrX 50008968 50008991 + hsa-miR-299-3p chr14 101023832 101023853 + hsa-miR-145-5p chr5 149430661 149430683 + hsa-miR-4465 chr6 140683855 140683876 + hsa-miR-500b-5p chrX 50010682 50010699 + hsa-miR-4766-5p chr22 40813927 40813947 - hsa-miR-1294 chr5 154347153 154347174 + hsa-miR-425-5p chr3 49020199 49020221 - hsa-miR-495-3p chr14 101033804 101033825 + hsa-miR-499b-5p chr20 34990443 34990463 - hsa-miR-519e-5p chr19 53679953 53679974 + hsa-miR-3129-5p chr2 189133082 189133103 - hsa-miR-1277-5p chrX 118386401 118386424 + hsa-miR-153-3p chr2 219294126 219294147 - hsa-miR-509-3p chrX 147258775 147258796 - hsa-miR-9-5p chr5 88666902 88666924 - hsa-miR-511-3p chr10 17845160 17845179 + hsa-miR-382-5p chr14 101054316 101054337 + hsa-miR-542-3p chrX 134541364 134541385 - hsa-miR-27b-3p chr9 95085505 95085525 + hsa-miR-1343-3p chr11 34941888 34941909 + hsa-miR-221-3p chrX 45746180 45746202 - hsa-miR-376a-3p chr14 101040825 101040845 + hsa-miR-561-5p chr2 188297517 188297538 + hsa-miR-196b-5p chr7 27169528 27169549 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + AL021707.1 chr22 38739003 38749041 + Display:

Experiment Detail

GEO ID: GSE94519 Sample Source: Blood Source Fraction: Serum Platform: GPL20115 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1224 Sample treatment protocol: All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection. RNA Extract protocol: RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN). RNA library preparation protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA