exRNAdisease

Entry Detail

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General Information

Database ID: exR0359266 RNA Name: ABRACL RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 139028745 End Site(bp): 139043302 External Links: ENSG00000146386

Disease Information

Disease Name: Amyotrophic Lateral Sclerosis Disease Category: Nervous System Diseases MeSH ID: D000690 Type: Diseases Category/Nervous System Diseases Alias: Sclerosis, Amyotrophic Lateral//Gehrig's Disease//Gehrig Disease//Gehrigs Disease//Charcot Disease//Motor Neuron Disease, Amyotrophic Lateral Sclerosis//Lou Gehrig's Disease//Lou-Gehrigs Disease//Disease, Lou-Gehrigs//ALS - Amyotrophic Lateral Sclerosis//ALS Amyotrophic Lateral Sclerosis//Lou Gehrig Disease//Amyotrophic Lateral Sclerosis, Guam Form//Amyotrophic Lateral Sclerosis-Parkinsonism-Dementia Complex 1//Amyotrophic Lateral Sclerosis Parkinsonism Dementia Complex 1//Guam Form of Amyotrophic Lateral Sclerosis//Guam Disease//Disease, Guam//Amyotrophic Lateral Sclerosis, Parkinsonism-Dementia Complex of Guam//Amyotrophic Lateral Sclerosis, Parkinsonism Dementia Complex of Guam//Amyotrophic Lateral Sclerosis With Dementia//Dementia With Amyotrophic Lateral Sclerosis

Expression Detail

GEO ID: GSE121519 Description: Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid. Experimental Design: Disease vs Control Case Disease Type: Amyotrophic Lateral Sclerosis Case Disease SubType: NA Case Sample: Amyotrophic Lateral Sclerosis Control Sample: Healthy Number of Case: 4 Number of Control: 4 Number of Samples: 8

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FGFBP3 chr10 91906584 91909486 - RPL11 chr1 23691742 23696835 + STIL chr1 47250139 47314147 - BIRC6 chr2 32357028 32618899 + EIF4A1 chr17 7572706 7579006 + REPIN1 chr7 150368189 150374044 + UBE2I chr16 1308880 1327018 + UTP18 chr17 51260546 51297936 + EZR chr6 158765741 158819368 - RPS5 chr19 58386400 58394806 + NUCKS1 chr1 205712822 205750182 - APLP2 chr11 130068147 130144811 + POMT1 chr9 131502902 131523806 + DCLRE1B chr1 113905213 113914086 + MIF chr22 23894383 23895227 + CALR chr19 12938578 12944489 + XPO7 chr8 21919662 22006585 + GOT1 chr10 99396870 99430624 - TUBB chr6 30720352 30725426 + MEX3A chr1 156072013 156082465 - PXMP2 chr12 132687587 132704985 + BABAM1 chr19 17267376 17281249 + HSPB8 chr12 119178642 119221131 + PER1 chr17 8140472 8156506 - DHX32 chr10 125836337 125896436 - APP chr21 25880550 26171128 - SLC38A2 chr12 46358188 46372773 - NEDD9 chr6 11183298 11382348 - S100A16 chr1 153606886 153613145 - SENP3-EIF4A1 chr17 7563287 7578715 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-205-5p chr1 209432166 209432187 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AL035458.2 chr20 34234840 34281173 - AC135586.2 chr12 132688049 132714912 + AL359924.1 chr1 237862175 237928321 + AP006621.3 chr11 777578 784297 + MAPKAPK5-AS1 chr12 111839764 111842902 - NEAT1 chr11 65422774 65445540 + Display:

Experiment Detail

GEO ID: GSE121519 Sample Source: Cerebrospinal Fluid Source Fraction: Exosome Platform: GPL18573 Method: NGS Num of detected RNA Type: 2 Num of detected RNAs of this Type: 17787 Sample treatment protocol: Up to 1 mL of human CSF was centrifuged at 2,000×g for 5 min and 10, 000×g for 20 min for supernatant. RNA Extract protocol: Supernatant from final centrifugation was applied to exoRNeasy spin column and RNA was extracted. RNA library preparation protocol: Whole cDNA amplification was performed with SMART-seq v4 Ultra Low Input RNA Kit. Illumina library was constructed with Nextera XT DNA Library Prep Kit.

Reference

PMID: 30630471 Title: Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid Author: Otake K, Kamiguchi H, Hirozane Y Journal: BMC Med Genomics. 2019 Jan 10;12(1):7. Description: The main purpose of this study is to established the methodology of comprehensive analysis of exosomal mRNAs in CSF by a highly sensitive next-generation sequencing.