exRNAdisease

Entry Detail

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General Information

Database ID: exR0366940 RNA Name: NUCKS1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 205712822 End Site(bp): 205750182 External Links: ENSG00000069275

Disease Information

Disease Name: Amyotrophic Lateral Sclerosis Disease Category: Nervous System Diseases MeSH ID: D000690 Type: Diseases Category/Nervous System Diseases Alias: Sclerosis, Amyotrophic Lateral//Gehrig's Disease//Gehrig Disease//Gehrigs Disease//Charcot Disease//Motor Neuron Disease, Amyotrophic Lateral Sclerosis//Lou Gehrig's Disease//Lou-Gehrigs Disease//Disease, Lou-Gehrigs//ALS - Amyotrophic Lateral Sclerosis//ALS Amyotrophic Lateral Sclerosis//Lou Gehrig Disease//Amyotrophic Lateral Sclerosis, Guam Form//Amyotrophic Lateral Sclerosis-Parkinsonism-Dementia Complex 1//Amyotrophic Lateral Sclerosis Parkinsonism Dementia Complex 1//Guam Form of Amyotrophic Lateral Sclerosis//Guam Disease//Disease, Guam//Amyotrophic Lateral Sclerosis, Parkinsonism-Dementia Complex of Guam//Amyotrophic Lateral Sclerosis, Parkinsonism Dementia Complex of Guam//Amyotrophic Lateral Sclerosis With Dementia//Dementia With Amyotrophic Lateral Sclerosis

Expression Detail

GEO ID: GSE121519 Description: Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid. Experimental Design: Disease vs Control Case Disease Type: Amyotrophic Lateral Sclerosis Case Disease SubType: NA Case Sample: Amyotrophic Lateral Sclerosis Control Sample: Healthy Number of Case: 4 Number of Control: 4 Number of Samples: 8

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDOA chr16 30064164 30070457 + AFAP1 chr4 7758714 7939926 - AC068946.2 chr2 219209772 219222738 - AC015813.2 chr17 57989038 58007246 - AC091959.3 chr5 146203550 146339251 + ACTR3 chr2 113890063 113962596 + AC005832.4 chr12 4604944 4662643 + ACSS2 chr20 34872146 34927962 + AC120057.2 chr17 7240427 7244635 - AGPAT3 chr21 43865223 43987592 + AC092143.1 chr16 89919165 89936092 + ALDH7A1 chr5 126531200 126595362 - ABRACL chr6 139028745 139043302 + ABCC1 chr16 15949577 16143074 + AGPAT1 chr6 32168212 32178096 - AC010422.3 chr19 12643831 12648397 - AC058822.1 chr4 53377839 54295272 + AL136454.1 chr1 192716132 192716653 + AC020915.5 chr19 58228914 58315183 + ACTR1A chr10 102461881 102502712 - ADAR chr1 154582057 154628013 - AKT2 chr19 40230317 40285536 - AL121594.1 chr14 35122549 35317474 + ACSL4 chrX 109624244 109733403 - AC010463.1 chr19 17267418 17282966 + AFF4 chr5 132875395 132963634 - AGL chr1 99850361 99924023 + AIMP2 chr7 6009255 6023834 + AHSP chr16 31527900 31528803 + AC008982.1 chr19 38817471 38840178 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-671-5p chr7 151238449 151238471 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005005.3 chr22 31082156 31083565 - AC005899.4 chr17 32328441 32329395 + AC012368.1 chr2 64143239 64252859 + AC015522.1 chr8 83912713 84142463 + AC022784.3 chr8 9255349 9260295 - AC069281.2 chr7 100572232 100578700 - AC132217.1 chr11 2129121 2129964 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE121519 Sample Source: Cerebrospinal Fluid Source Fraction: Exosome Platform: GPL18573 Method: NGS Num of detected RNA Type: 2 Num of detected RNAs of this Type: 17787 Sample treatment protocol: Up to 1 mL of human CSF was centrifuged at 2,000×g for 5 min and 10, 000×g for 20 min for supernatant. RNA Extract protocol: Supernatant from final centrifugation was applied to exoRNeasy spin column and RNA was extracted. RNA library preparation protocol: Whole cDNA amplification was performed with SMART-seq v4 Ultra Low Input RNA Kit. Illumina library was constructed with Nextera XT DNA Library Prep Kit.

Reference

PMID: 30630471 Title: Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid Author: Otake K, Kamiguchi H, Hirozane Y Journal: BMC Med Genomics. 2019 Jan 10;12(1):7. Description: The main purpose of this study is to established the methodology of comprehensive analysis of exosomal mRNAs in CSF by a highly sensitive next-generation sequencing.