exRNAdisease

Entry Detail

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General Information

Database ID: exR0368410 RNA Name: PTMA RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 231706895 End Site(bp): 231713541 External Links: ENSG00000187514

Disease Information

Disease Name: Amyotrophic Lateral Sclerosis Disease Category: Nervous System Diseases MeSH ID: D000690 Type: Diseases Category/Nervous System Diseases Alias: Sclerosis, Amyotrophic Lateral//Gehrig's Disease//Gehrig Disease//Gehrigs Disease//Charcot Disease//Motor Neuron Disease, Amyotrophic Lateral Sclerosis//Lou Gehrig's Disease//Lou-Gehrigs Disease//Disease, Lou-Gehrigs//ALS - Amyotrophic Lateral Sclerosis//ALS Amyotrophic Lateral Sclerosis//Lou Gehrig Disease//Amyotrophic Lateral Sclerosis, Guam Form//Amyotrophic Lateral Sclerosis-Parkinsonism-Dementia Complex 1//Amyotrophic Lateral Sclerosis Parkinsonism Dementia Complex 1//Guam Form of Amyotrophic Lateral Sclerosis//Guam Disease//Disease, Guam//Amyotrophic Lateral Sclerosis, Parkinsonism-Dementia Complex of Guam//Amyotrophic Lateral Sclerosis, Parkinsonism Dementia Complex of Guam//Amyotrophic Lateral Sclerosis With Dementia//Dementia With Amyotrophic Lateral Sclerosis

Expression Detail

GEO ID: GSE121519 Description: Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid. Experimental Design: Disease vs Control Case Disease Type: Amyotrophic Lateral Sclerosis Case Disease SubType: NA Case Sample: Amyotrophic Lateral Sclerosis Control Sample: Healthy Number of Case: 4 Number of Control: 4 Number of Samples: 8

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC131160.1 chr3 183815568 183884889 - AL590764.2 chrX 71103987 71111575 - ACTR2 chr2 65227753 65271253 + AC006030.1 chr2 74211604 74363377 - AC008763.3 chr19 7678501 7682854 + AC120057.2 chr17 7240427 7244635 - AC092647.5 chr7 55887277 55955239 + ABHD5 chr3 43690108 43734371 + ADRA2C chr4 3766348 3768526 + ABT1 chr6 26596953 26600739 + ADNP2 chr18 80109262 80147523 + AC139530.2 chr17 81703371 81720539 + AL358113.1 chr9 69035747 69255187 + AC068946.1 chr2 219075329 219170827 - AKAP8L chr19 15380050 15419141 - AL603832.3 chr1 112702614 112711433 - ACAA2 chr18 49782164 49813953 - ALDH18A1 chr10 95605941 95656711 - AC009690.1 chr15 72284727 72375981 - AL136454.1 chr1 192716132 192716653 + ACTR1B chr2 97655939 97664044 - AGO1 chr1 35869808 35930532 + ADGRA3 chr4 22345071 22516066 - ADAM17 chr2 9488486 9556732 - ABCF3 chr3 184186023 184194012 + AC093323.1 chr4 6663396 6676755 + AKR1A1 chr1 45550543 45570049 + ADO chr10 62804720 62808479 + AC068547.1 chr2 151802651 151973949 - ABL2 chr1 179099330 179229684 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-483-5p chr11 2134181 2134202 - hsa-miR-25-5p chr7 100093610 100093630 - hsa-miR-1244 chr2 231713368 231713393 + hsa-miR-3652 chr12 103930425 103930442 + hsa-miR-3960 chr9 127785879 127785898 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005083.1 chr7 20217577 20221700 + AC007743.1 chr2 56173534 56185870 - AC007952.4 chr17 19112000 19112636 - AC008771.1 chr5 80411231 80488095 - AC009022.1 chr16 69976297 70065948 - AC012485.1 chr2 238231684 238255633 + AC012615.1 chr19 1874871 1876169 - AC016876.2 chr17 7581964 7584086 - AC018521.1 chr17 47945424 47981736 + AC026362.1 chr12 122975320 122982907 + AC061975.1 chr17 28263634 28266369 - AC068473.5 chr18 79677287 79679358 - AC092755.2 chr15 59688517 59689418 + AC116407.1 chr17 32141226 32143135 - AC245033.4 chr15 82533175 82540008 - AL121992.1 chr1 15586136 15603626 - AL137003.1 chr6 16764346 16766883 + AL137782.1 chr13 75549773 75807120 + Display:

Experiment Detail

GEO ID: GSE121519 Sample Source: Cerebrospinal Fluid Source Fraction: Exosome Platform: GPL18573 Method: NGS Num of detected RNA Type: 2 Num of detected RNAs of this Type: 17787 Sample treatment protocol: Up to 1 mL of human CSF was centrifuged at 2,000×g for 5 min and 10, 000×g for 20 min for supernatant. RNA Extract protocol: Supernatant from final centrifugation was applied to exoRNeasy spin column and RNA was extracted. RNA library preparation protocol: Whole cDNA amplification was performed with SMART-seq v4 Ultra Low Input RNA Kit. Illumina library was constructed with Nextera XT DNA Library Prep Kit.

Reference

PMID: 30630471 Title: Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid Author: Otake K, Kamiguchi H, Hirozane Y Journal: BMC Med Genomics. 2019 Jan 10;12(1):7. Description: The main purpose of this study is to established the methodology of comprehensive analysis of exosomal mRNAs in CSF by a highly sensitive next-generation sequencing.