exRNAdisease

Entry Detail

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General Information

Database ID: exR0373385 RNA Name: AAAS RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 53307456 End Site(bp): 53324864 External Links: ENSG00000094914

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MSI1 chr12 120341330 120369164 - RPL11 chr1 23691742 23696835 + RPLP2 chr11 809965 812880 + MIF chr22 23894383 23895227 + MRPS10 chr6 42206807 42217861 - RCSD1 chr1 167630093 167708696 + LRCH4 chr7 100574011 100586129 - LRP2 chr2 169127109 169362534 - MEX3C chr18 51174550 51218304 - MTRNR2L12 chr3 96617188 96618236 - MTA1 chr14 105419820 105470729 + B2M chr15 44711487 44718877 + CDC25B chr20 3786772 3806121 + SFPQ chr1 35176378 35193145 - ZNF207 chr17 32350117 32381886 + VPS41 chr7 38722974 38932394 - RPL13 chr16 89560657 89566828 + METTL16 chr17 2405562 2511891 - MAPK14 chr6 36027677 36111236 + CD99 chrX 2691187 2741309 + YBX3 chr12 10699089 10723323 - AP000350.4 chr22 23862188 23895223 + PKM chr15 72199029 72231822 - FRAS1 chr4 78057323 78544269 + LRIG1 chr3 66378797 66501263 - RACK1 chr5 181236897 181248096 - ALDOA chr16 30064164 30070457 + MYL6 chr12 56158161 56163496 + NBR1 chr17 43170481 43211689 + LAMA5 chr20 62307955 62367312 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC069281.2 chr7 100572232 100578700 - PCAT6 chr1 202810954 202812156 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA