exRNAdisease

Entry Detail

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General Information

Database ID: exR0373386 RNA Name: AACS RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 125065434 End Site(bp): 125143333 External Links: ENSG00000081760

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand NPM3 chr10 101781325 101783413 - FGFR2 chr10 121478334 121598458 - PDXK chr21 43719094 43762307 + EXOC6B chr2 72175984 72826041 - SIPA1L2 chr1 232397965 232561558 - NOP14 chr4 2937933 2963406 - ZNF579 chr19 55576774 55580848 - MTERF4 chr2 241072169 241102332 - EIF6 chr20 35278911 35284985 - CITED2 chr6 139371807 139374648 - EME1 chr17 50373220 50381483 + PHLDA1 chr12 76025447 76033932 - RPLP2 chr11 809965 812880 + ZBTB44 chr11 130226677 130314917 - KLHL21 chr1 6590724 6614607 - TMEM259 chr19 1009648 1021179 - RPS5 chr19 58386400 58394806 + PCBP2 chr12 53452102 53481162 + VCP chr9 35056064 35072627 - BRD9 chr5 850291 892801 - TRIM13 chr13 49995888 50020481 + SUPT20H chr13 37009312 37059713 - AIFM2 chr10 70098223 70132934 - AL121753.1 chr20 35267885 35280043 - OST4 chr2 27070472 27071654 - HSP90AB1 chr6 44246166 44253888 + BCKDK chr16 31106107 31112791 + AAMP chr2 218264123 218270257 - SELENOH chr11 57741250 57743554 + BUD31 chr7 99408641 99419616 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC023509.1 chr12 53441741 53467528 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA