exRNAdisease

Entry Detail

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General Information

Database ID: exR0373389 RNA Name: AADAT RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 170060222 End Site(bp): 170091699 External Links: ENSG00000109576

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ARL4C chr2 234493041 234497081 - B3GALNT2 chr1 235447190 235504452 - CPD chr17 30378927 30469989 + EP400 chr12 131949942 132080460 + FOXF2 chr6 1389576 1395603 + FXR1 chr3 180868141 180982753 + GNAS chr20 58839718 58911192 + HOXA1 chr7 27093313 27095996 - LRP8 chr1 53242364 53328469 - MACF1 chr1 39081316 39487177 + NCSTN chr1 160343316 160358952 + NDUFB3 chr2 201071433 201085750 + PGS1 chr17 78378649 78425114 + PSMD3 chr17 39980807 39997959 + RABL6 chr9 136807943 136841187 + ZNF43 chr19 21804949 21852125 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-15a-5p chr13 50049167 50049188 - hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-497-5p chr17 7017979 7017999 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL355987.4 chr9 136799223 136810042 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA