exRNAdisease

Entry Detail

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General Information

Database ID: exR0373390 RNA Name: AAGAB RNA Type: mRNA Chromosome: chr15 Starnd: - Coordinate: Start Site(bp): 67200667 End Site(bp): 67255195 External Links: ENSG00000103591

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand BTBD1 chr15 83016423 83067252 - PIMREG chr17 6444441 6451469 + HNRNPA1 chr12 54280193 54287088 + SETD1A chr16 30957754 30984664 + RAC3 chr17 82031678 82034204 + ARF4 chr3 57571363 57598220 - RPL27 chr17 42998273 43002959 + HSDL1 chr16 84122141 84145192 - CHD7 chr8 60678740 60868028 + CRABP2 chr1 156699606 156705816 - DUT chr15 48331011 48343373 + UNC119B chr12 120710458 120723640 + PRDM2 chr1 13700198 13825079 + BCAP31 chrX 153700492 153724565 - TOMM20 chr1 235109341 235128837 - CDPF1 chr22 46244011 46250311 - MRPL45 chr17 38297023 38323217 + CHMP3 chr2 86503430 86563479 - RPS23 chr5 82273320 82278396 - RTN4 chr2 54972187 55112621 - CCND2 chr12 4273762 4305353 + FUS chr16 31180110 31194871 + YWHAQ chr2 9583967 9630997 - PFN1 chr17 4945652 4949061 - GPAM chr10 112149865 112215377 - HYAL2 chr3 50317790 50322782 - R3HDM1 chr2 135531455 135725270 + FTL chr19 48965309 48966879 + RPL10A chr6 35468401 35470785 + RIC1 chr9 5629025 5776557 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand HLA-F-AS1 chr6 29726601 29749049 - PARD6G-AS1 chr18 80147924 80179839 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA