exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373395 RNA Name: AAR2 RNA Type: mRNA Chromosome: chr20 Starnd: + Coordinate: Start Site(bp): 36236459 End Site(bp): 36270918 External Links: ENSG00000131043

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MCM3AP chr21 46235133 46286297 - PLCB2 chr15 40278176 40307935 - MANBAL chr20 37289638 37317260 + LDHA chr11 18394560 18408425 + DHX15 chr4 24517441 24584554 - YWHAH chr22 31944522 31957603 + M6PR chr12 8940361 8949761 - LSS chr21 46188141 46228824 - MTHFR chr1 11785723 11806455 - EGLN2 chr19 40798996 40808434 + COX6B1 chr19 35648323 35658782 + PKP2 chr12 32790745 32896840 - TEN1-CDK3 chr17 75979231 76005999 + TMEM47 chrX 34627075 34657285 - HMOX2 chr16 4474690 4510347 + BRF1 chr14 105209286 105315589 - CCDC77 chr12 389273 442642 + DDX17 chr22 38483438 38507660 - NELFE chr6 31952087 31959038 - PAGR1 chr16 29816152 29822489 + LMTK2 chr7 98106862 98209638 + RAB4B-EGLN2 chr19 40778242 40808418 + HNRNPH3 chr10 68331174 68343191 + ACTR1A chr10 102461881 102502712 - CANX chr5 179678628 179731641 + MCM7 chr7 100092728 100101940 - RPL3 chr22 39312882 39320389 - FLII chr17 18244815 18258738 - TUBA1A chr12 49184795 49189080 - PAICS chr4 56435741 56464579 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-103a-3p chr5 168560904 168560926 - hsa-miR-147a chr9 120244985 120245004 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand EBLN3P chr9 37079645 37090928 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA