exRNAdisease

Entry Detail

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General Information

Database ID: exR0373404 RNA Name: ABCA1 RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 104781006 End Site(bp): 104928155 External Links: ENSG00000165029

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand COX5B chr2 97646062 97648383 + EIF3L chr22 37848868 37889407 + EWSR1 chr22 29268009 29300525 + FEN1 chr11 61792911 61797238 + GANAB chr11 62624826 62646726 - GAPDH chr12 6534512 6538374 + HADH chr4 107989714 108035175 + IGF2 chr11 2129112 2141238 - IGF2BP3 chr7 23310209 23470491 - KDM3B chr5 138352685 138437028 + LSMEM1 chr7 112480853 112491062 + LUC7L3 chr17 50719565 50756219 + MPI chr15 74890005 74902219 + NISCH chr3 52455118 52493068 + PIANP chr12 6693792 6700800 - PPRC1 chr10 102132994 102150333 + RPL13A chr19 49487554 49492308 + RPL14 chr3 40457292 40468587 + RPL19 chr17 39200283 39204732 + RPS23 chr5 82273320 82278396 - SEC11A chr15 84669538 84716460 - SHROOM3 chr4 76435229 76783253 + SND1 chr7 127652194 128092609 + UBE2R2 chr9 33817160 33920399 + ZNF217 chr20 53567065 53609907 - ZNF568 chr19 36916329 36998700 + ZNF696 chr8 143289676 143299952 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1294 chr5 154347153 154347174 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA