exRNAdisease

Entry Detail

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General Information

Database ID: exR0373408 RNA Name: ABCA3 RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 2275881 End Site(bp): 2340746 External Links: ENSG00000167972

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ATG2B chr14 96279195 96363341 - BCAR1 chr16 75228181 75268053 - LAMB2 chr3 49121114 49133118 - HLA-F chr6 29722775 29738528 + NOC4L chr12 132144457 132152473 + HS3ST3A1 chr17 13494032 13601929 - ASRGL1 chr11 62337448 62393412 + HNRNPUL2-BSCL2 chr11 62690275 62727384 - SIK3 chr11 116843402 117098437 - MCMBP chr10 119829404 119892556 - CYB5R3 chr22 42617840 42649392 - RPL11 chr1 23691742 23696835 + KLHL21 chr1 6590724 6614607 - PVRIG chr7 100218241 100221490 + ZNF219 chr14 21090077 21104722 - PKM chr15 72199029 72231822 - HMGB2 chr4 173331376 173334432 - DNAJC18 chr5 139408588 139444491 - MT-ND4L chrMT 10470 10766 + CHTF18 chr16 788046 800737 + CDH4 chr20 61252261 61940617 + TSC2 chr16 2047967 2089491 + CDCA2 chr8 25459199 25507911 + TPRN chr9 137191617 137204193 - HLA-E chr6 30489509 30494194 + DCP2 chr5 112976702 113022195 + FAM104A chr17 73207353 73236753 - BUB3 chr10 123154402 123170467 + RFWD3 chr16 74621399 74666877 - TUBB2A chr6 3153666 3157544 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022167.2 chr16 8848105 8860456 + AC245014.3 chr1 145281116 145281462 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA