exRNAdisease

Entry Detail

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General Information

Database ID: exR0373418 RNA Name: ABCB4 RNA Type: mRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 87401697 End Site(bp): 87480435 External Links: ENSG00000005471

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB1 chr7 87503017 87713323 - AP1G2 chr14 23559565 23568070 - BASP1 chr5 17065598 17276843 + CENPV chr17 16342534 16353656 - CLDN6 chr16 3014712 3020071 - CUL5 chr11 108008898 108107761 + DDX5 chr17 64498254 64508199 - EIF5A chr17 7306999 7312463 + FXR2 chr17 7591230 7614897 - HNRNPDL chr4 82422564 82430408 - HSPA8 chr11 123057489 123063230 - HTATSF1 chrX 136497079 136512346 + KIF5B chr10 32009015 32056425 - MAF1 chr8 144104461 144107611 + NUAK1 chr12 106063340 106140033 - PAM chr5 102753981 103031105 + PHF14 chr7 10973336 11169630 + RPL5 chr1 92832013 92841924 + SERF2 chr15 43777087 43802589 + SLC39A1 chr1 153959099 153968184 - SNX18 chr5 54517759 54546586 + SPOCK2 chr10 72059034 72089032 - STX7 chr6 132445867 132513198 - TMEM167A chr5 83052846 83077863 - TPT1 chr13 45333471 45341370 - ZNF136 chr19 12163064 12189871 + ZNF385A chr12 54369133 54391298 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA