exRNAdisease

Entry Detail

General Information

Database ID:

exR0373423

RNA Name:

ABCB9

RNA Type:

mRNA

Chromosome:

chr12

Starnd:

-

Coordinate:

Start Site(bp):

122920951

End Site(bp):

122981649

External Links:

ENSG00000150967

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
CS	chr12	56271699	56300391	-
EIF3C	chr16	28688558	28735730	+
EPB41L4B	chr9	109171975	109320964	-
ERF	chr19	42247569	42255128	-
FAU	chr11	65120630	65122177	-
FOXRED2	chr22	36487190	36507101	-
LARP1	chr5	154712843	154817605	+
LCOR	chr10	96832282	96995959	+
LMO2	chr11	33858576	33892076	-
PAQR4	chr16	2969270	2973484	+
PVR	chr19	44643798	44666162	+
SNRPD3	chr22	24555958	24582052	+
TCF25	chr16	89873570	89913627	+
TMEM259	chr19	1009648	1021179	-

miRNA targets:

NA

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC245014.3	chr1	145281116	145281462	+
AC079949.1	chr12	127142029	127146532	-

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA