exRNAdisease

Entry Detail

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General Information

Database ID: exR0373424 RNA Name: ABCC1 RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 15949577 End Site(bp): 16143074 External Links: ENSG00000103222

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TMED2 chr12 123584533 123598582 + PCDHGB6 chr5 141408021 141512979 + ADGRV1 chr5 90529344 91164437 + CENPU chr4 184694085 184734130 - RFC5 chr12 118013588 118033130 + BLVRB chr19 40447765 40465764 - MACF1 chr1 39081316 39487177 + RPS5 chr19 58386400 58394806 + SETD1A chr16 30957754 30984664 + CRTC3 chr15 90529923 90645345 + PCDHGB1 chr5 141350102 141512979 + PCDHGA8 chr5 141390157 141512979 + NUCKS1 chr1 205712822 205750182 - MT-ND4 chrMT 10760 12137 + ASXL1 chr20 32358330 32439319 + STRBP chr9 123109500 123268586 - UBE2S chr19 55399745 55407788 - ZDHHC4 chr7 6577434 6589374 + NOP53 chr19 47745546 47757058 + CD52 chr1 26317958 26320523 + PSMB9 chr6 32844136 32859851 + PCDHGA7 chr5 141382739 141512975 + MT-CYB chrMT 14747 15887 + MT-ND5 chrMT 12337 14148 + PCDHGA6 chr5 141373914 141512979 + PCDHGA5 chr5 141364232 141512979 + EIF4G2 chr11 10797050 10808940 - MT-CO2 chrMT 7586 8269 + SC5D chr11 121292681 121313410 + AC104109.3 chr5 134167170 134226071 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + AL136419.1 chr14 23969931 24051377 + AC138932.3 chr16 14909887 14911345 - ERVK13-1 chr16 2660348 2682379 - GAS5 chr1 173858559 173868882 - MIR663AHG chr20 26167817 26251546 - SNHG17 chr20 38419638 38435409 - SNHG19 chr16 2154797 2155358 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA