exRNAdisease

Entry Detail

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General Information

Database ID: exR0373439 RNA Name: ABCE1 RNA Type: mRNA Chromosome: chr4 Starnd: + Coordinate: Start Site(bp): 145098288 End Site(bp): 145129524 External Links: ENSG00000164163

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MGST1 chr12 16347142 16609259 + MTX2 chr2 176269395 176338025 + RPL37A chr2 216498825 216579180 + FAM162A chr3 122384176 122412334 + ENOPH1 chr4 82430590 82461177 + ANKRD17 chr4 73073376 73258798 - SLC25A29 chr14 100291116 100306547 - INSIG1 chr7 155297776 155310235 + LAMTOR1 chr11 72085895 72103297 - GNB5 chr15 52115105 52191369 - IVNS1ABP chr1 185296388 185317273 - TIMMDC1 chr3 119498547 119525090 + HOXA3 chr7 27106184 27152581 - STMN1 chr1 25884181 25906991 - UGP2 chr2 63840940 63891562 + RPL3 chr22 39312882 39320389 - PGK1 chrX 77910739 78129295 + RBL2 chr16 53433977 53491648 + BCAT1 chr12 24810024 24949101 - RPS23 chr5 82273320 82278396 - TNPO2 chr19 12699194 12724011 - TUBB chr6 30720352 30725426 + CHTF8 chr16 69118010 69132578 - CLPTM1L chr5 1317752 1345099 - RAB10 chr2 26034084 26137454 + MDH2 chr7 76048051 76067508 + CREBZF chr11 85659708 85682908 - C19orf48 chr19 50797704 50804929 - EWSR1 chr22 29268009 29300525 + ATP5MG chr11 118401606 118431496 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL157871.6 chr14 100279959 100291456 - FAM215B chr17 46558830 46562795 - MAPKAPK5-AS1 chr12 111839764 111842902 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA