exRNAdisease

Entry Detail

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General Information

Database ID: exR0373458 RNA Name: ABHD16A RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 31686955 End Site(bp): 31703356 External Links: ENSG00000204427

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CBSL chr21 6444869 6468040 - FBXO45 chr3 196568611 196589059 + SENP6 chr6 75601509 75718281 + ZNF711 chrX 85244032 85273362 + WLS chr1 68098473 68233120 - RPA1 chr17 1829702 1900082 + ARID1B chr6 156776020 157210779 + GCN1 chr12 120127202 120194715 - FASTKD5 chr20 3146519 3159865 - VIPR1 chr3 42489299 42537573 + MRPL54 chr19 3762682 3768575 + RPL18 chr19 48615328 48619184 - CHD1 chr5 98853985 98928957 - TRAF4 chr17 28744005 28750956 + PTMS chr12 6765516 6770952 + FLNC chr7 128830377 128859274 + RAB1B chr11 66268590 66277492 + UCHL1 chr4 41256413 41268455 + CBS chr21 43053191 43076943 - NOL6 chr9 33461353 33473930 - TMEM50A chr1 25338317 25362361 + SLC39A1 chr1 153959099 153968184 - MAF chr16 79585843 79600737 - PACSIN2 chr22 42835412 43015149 - MOB2 chr11 1469457 1501247 - GJA1 chr6 121435595 121449727 + LIG3 chr17 34980512 35009743 + RPS27L chr15 63125872 63158021 - SLC25A28 chr10 99610522 99620609 - CCT7 chr2 73233420 73253021 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA