exRNAdisease

Entry Detail

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General Information

Database ID: exR0373462 RNA Name: ABHD17C RNA Type: mRNA Chromosome: chr15 Starnd: + Coordinate: Start Site(bp): 80679684 End Site(bp): 80755621 External Links: ENSG00000136379

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand NUB1 chr7 151341699 151378449 + PLEKHG3 chr14 64704102 64750249 + KIAA1671 chr22 24952730 25197448 + TCFL5 chr20 62841005 62861822 - AGPAT1 chr6 32168212 32178096 - EEF2 chr19 3976056 3985463 - MEX3A chr1 156072013 156082465 - MKKS chr20 10401009 10434222 - ANXA2 chr15 60347134 60402883 - BTBD7 chr14 93237550 93333092 - CLTA chr9 36190856 36304781 + CDC37 chr19 10391133 10420121 - FMR1 chrX 147911951 147951125 + ZFHX3 chr16 72782885 73891871 - GJA1 chr6 121435595 121449727 + CLEC2D chr12 9664969 9699553 + NISCH chr3 52455118 52493068 + PRTG chr15 55611544 55743152 - SUZ12 chr17 31937007 32001038 + GNAS chr20 58839718 58911192 + MLLT1 chr19 6210381 6279975 - TRAPPC12 chr2 3379675 3485094 + NARS2 chr11 78435968 78574874 - PAIP1 chr5 43526267 43557758 - NUP93 chr16 56730118 56850286 + AK1 chr9 127866486 127877675 - HM13 chr20 31514410 31577923 + CBX3 chr7 26201162 26213607 + MRPS16 chr10 73248843 73252693 - RBM4B chr11 66664998 66677887 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC079949.1 chr12 127142029 127146532 - AL157935.2 chr9 127934503 127940952 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA