exRNAdisease

Entry Detail

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General Information

Database ID: exR0373465 RNA Name: ABHD4 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 22598237 End Site(bp): 22613215 External Links: ENSG00000100439

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FAM219A chr9 34398184 34458570 - RPL32 chr3 12834485 12841582 - ZNF708 chr19 21291160 21329425 - AP2A1 chr19 49766968 49807113 + ARHGEF4 chr2 130836916 131047263 + POLD4 chr11 67350772 67356972 - PITPNC1 chr17 67377281 67697261 + TUBA1A chr12 49184795 49189080 - TRIP6 chr7 100867387 100873454 + AXIN1 chr16 287440 352723 - HAT1 chr2 171922448 171983686 + MYL12A chr18 3247481 3256236 + HNRNPA1 chr12 54280193 54287088 + PSMB8 chr6 32840717 32844679 - MT-CO1 chrMT 5904 7445 + GAPDH chr12 6534512 6538374 + CNPPD1 chr2 219171897 219178106 - DDX1 chr2 15591178 15631111 + HNRNPK chr9 83968083 83980616 - OGT chrX 71533104 71575892 + PUM1 chr1 30931506 31065991 - BTBD2 chr19 1985438 2034881 - PSAP chr10 71816298 71851325 - EWSR1 chr22 29268009 29300525 + EIF6 chr20 35278911 35284985 - KDM5B chr1 202724495 202808487 - CBSL chr21 6444869 6468040 - AL121753.1 chr20 35267885 35280043 - CCT8 chr21 29055805 29073797 - TRPV3 chr17 3510502 3557995 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-31-5p chr9 21512158 21512178 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AGAP1-IT1 chr2 235505751 235507566 + GATA2-AS1 chr3 128489212 128502970 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA