exRNAdisease

Entry Detail

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General Information

Database ID: exR0373467 RNA Name: ABHD6 RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 58237532 End Site(bp): 58295693 External Links: ENSG00000163686

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010422.3 chr19 12643831 12648397 - AMY2B chr1 103553815 103579534 + FSTL1 chr3 120392293 120450993 - GSKIP chr14 96363452 96387288 + HLA-B chr6 31269491 31357188 - NDUFA10 chr2 239892450 240025345 - NME2 chr17 51165435 51171747 + PSMD14 chr2 161308425 161411717 + RPL27A chr11 8682788 8714759 + SLC12A8 chr3 125082636 125212864 - SLC25A29 chr14 100291116 100306547 - SMU1 chr9 33041765 33076674 - SRSF5 chr14 69726900 69772005 + SSBP4 chr19 18418864 18434562 + TERF2IP chr16 75647773 75761872 + TICRR chr15 89575469 89631056 + TMED7 chr5 115613210 115632992 - TPI1 chr12 6867119 6870948 + UBR7 chr14 93207241 93229215 + VIM chr10 17228241 17237593 + WIPF1 chr2 174559572 174682916 - ZFAND2B chr2 219195237 219209651 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016598.1 chr5 143489855 143531350 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA