exRNAdisease

Entry Detail

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General Information

Database ID: exR0373482 RNA Name: ABT1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 26596953 End Site(bp): 26600739 External Links: ENSG00000146109

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand HSP90AB1 chr6 44246166 44253888 + RPS20 chr8 56067295 56074581 - SLC37A4 chr11 119024114 119030906 - PAFAH1B2 chr11 117144284 117176894 + RNASEH2C chr11 65714005 65720818 - CLTA chr9 36190856 36304781 + USF1 chr1 161039251 161045977 - POR chr7 75899200 75986855 + ENO1 chr1 8861000 8879190 - RPL22L1 chr3 170864875 170870208 - RAN chr12 130872037 130877678 + GSTP1 chr11 67583742 67586656 + PDLIM1 chr10 95237572 95291012 - MPDU1 chr17 7583529 7592789 + HSPD1 chr2 197486584 197516737 - THOC5 chr22 29505879 29555216 - PAK1IP1 chr6 10694972 10709782 + CHCHD10 chr22 23765834 23768443 - DHRS4L2 chr14 23969874 24006408 + GFOD1 chr6 13357830 13487662 - DNAJC14 chr12 55820960 55830824 - NFE2L1 chr17 48048329 48061545 + SFRP1 chr8 41261962 41309473 - B2M chr15 44711487 44718877 + BABAM1 chr19 17267376 17281249 + GTPBP1 chr22 38705742 38738299 + IL4R chr16 27313668 27364778 + HLA-DRA chr6 32439878 32445046 + MCFD2 chr2 46901870 46941855 - EEF1A1 chr6 73515750 73523797 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-873-5p chr9 28888925 28888945 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008969.1 chr19 58002061 58011232 + AC020663.1 chr16 4730115 4752565 - MALAT1 chr11 65497688 65506516 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA