exRNAdisease

Entry Detail

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General Information

Database ID: exR0373533 RNA Name: ACOT9 RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 23701055 End Site(bp): 23766475 External Links: ENSG00000123130

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CALM2 chr2 47160083 47176921 - NKX1-2 chr10 124445243 124450035 - PKP3 chr11 392614 404908 + GDI2 chr10 5765223 5842132 - RPLP1 chr15 69452814 69456205 + TTLL3 chr3 9808086 9855138 + KPNA5 chr6 116681187 116741867 + PKN2 chr1 88684222 88836255 + PLEKHB2 chr2 131104847 131353709 + AIP chr11 67483026 67491103 + MT-CO2 chrMT 7586 8269 + NUP155 chr5 37288137 37371106 - PIEZO1 chr16 88715338 88785220 - N4BP2L2 chr13 32432417 32538885 - OCLN chr5 69492292 69558104 + CEP55 chr10 93496612 93529092 + HLA-C chr6 31268749 31272130 - PNPO chr17 47941506 47949308 + MYDGF chr19 4641374 4670362 - SSBP1 chr7 141738334 141787922 + NECAP2 chr1 16440721 16460078 + RPS16 chr19 39433137 39435949 - HMGCS1 chr5 43287470 43313512 - DICER1 chr14 95086228 95158010 - ANKRD46 chr8 100509752 100559784 - PCBP1 chr2 70087477 70089203 + PHTF2 chr7 77798792 77957503 + RGS1 chr1 192575763 192580024 + ADNP chr20 50888916 50931437 - CD74 chr5 150400041 150412929 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand JPX chrX 73944182 74070408 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA