exRNAdisease

Entry Detail

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General Information

Database ID: exR0373536 RNA Name: ACOX3 RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 8366282 End Site(bp): 8440723 External Links: ENSG00000087008

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AFAP1 chr4 7758714 7939926 - COX4I1 chr16 85798633 85807068 + COX7C chr5 86617928 86620962 + DOCK10 chr2 224765090 225042445 - HADH chr4 107989714 108035175 + HSPA9 chr5 138553756 138575416 - IFI6 chr1 27666064 27672198 - INTS10 chr8 19817391 19852083 + LRRC1 chr6 53794497 53924125 + MUTYH chr1 45329163 45340893 - PABPC1 chr8 100685816 100722809 - PCBP1 chr2 70087477 70089203 + RACK1 chr5 181236897 181248096 - SERGEF chr11 17788048 18013047 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC055860.1 chr11 18000542 18022931 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA