exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373541 RNA Name: ACPP RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 132317369 End Site(bp): 132368298 External Links: ENSG00000014257

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC120057.2 chr17 7240427 7244635 - ADGRA3 chr4 22345071 22516066 - AGTRAP chr1 11736084 11754802 + CHTOP chr1 153633982 153646306 + CLCN3 chr4 169612633 169723673 + G3BP1 chr5 151771045 151812785 + GABARAP chr17 7240008 7242449 - LZIC chr1 9922113 9943407 - NUDT16L1 chr16 4693694 4695859 + OTUD5 chrX 48922028 48958386 - PPIA chr7 44796680 44824564 + RPL13 chr16 89560657 89566828 + RPL14 chr3 40457292 40468587 + SAFB chr19 5623035 5668478 + SRSF1 chr17 58000919 58007346 - STC2 chr5 173314713 173329503 - TFG chr3 100709331 100748964 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA