exRNAdisease

Entry Detail

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General Information

Database ID: exR0373547 RNA Name: ACSF2 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 50426158 End Site(bp): 50474845 External Links: ENSG00000167107

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006030.1 chr2 74211604 74363377 - AP4E1 chr15 50908672 51005895 + ARF5 chr7 127588386 127591700 + C11orf49 chr11 46936689 47164385 + COX10 chr17 14069490 14231736 + CPNE5 chr6 36740775 36839444 - DCTN1 chr2 74361154 74392087 - EIF4B chr12 53006158 53042209 + FSCN3 chr7 127591409 127602144 + GGA2 chr16 23463542 23521995 - GSTP1 chr11 67583742 67586656 + HSPA9 chr5 138553756 138575416 - IARS2 chr1 220094132 220148041 + MEF2A chr15 99565417 99716466 + PARP1 chr1 226360691 226408093 - PIP5K1A chr1 151197949 151249536 + RPL3 chr22 39312882 39320389 - RPS12 chr6 132814569 132817564 + SCOC chr4 140257286 140385726 + SEMA6B chr19 4542593 4559684 - TMBIM6 chr12 49707725 49764934 + UBA2 chr19 34428352 34471251 + UBE2A chrX 119574536 119591083 + YPEL3 chr16 30092314 30096915 - ZNF219 chr14 21090077 21104722 - ZNF785 chr16 30573740 30585769 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand CCDC144NL-AS1 chr17 20868433 21002276 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA