exRNAdisease

Entry Detail

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General Information

Database ID: exR0373561 RNA Name: ACSS3 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 80936414 End Site(bp): 81261210 External Links: ENSG00000111058

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TRAM1L1 chr4 117083554 117085576 - NMNAT2 chr1 183248237 183418380 - EPB41L2 chr6 130839347 131063322 - CNST chr1 246566444 246668595 + TJP1 chr15 29699367 29968865 - UBL7 chr15 74445977 74461182 - SENP3-EIF4A1 chr17 7563287 7578715 + UBE2E1 chr3 23805955 23891640 + MIDN chr19 1248553 1259140 + TUBB chr6 30720352 30725426 + KXD1 chr19 18557762 18569387 + U2SURP chr3 142964497 143060725 + TPI1 chr12 6867119 6870948 + UBE2D2 chr5 139526431 139628434 + SCAPER chr15 76347904 76905444 - PTGES3 chr12 56663341 56688408 - DEK chr6 18223860 18264548 - OPRD1 chr1 28812142 28871267 + POLR1D chr13 27620742 27744237 + RPS23 chr5 82273320 82278396 - EIF4A1 chr17 7572706 7579006 + RHEB chr7 151466012 151520120 - RPS6KC1 chr1 213051233 213274774 + ME2 chr18 50879080 50954257 + ARF4 chr3 57571363 57598220 - ENO1 chr1 8861000 8879190 - SWT1 chr1 185157080 185291781 + CRABP2 chr1 156699606 156705816 - NONO chrX 71283192 71301168 + HMGN4 chr6 26538366 26546933 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - NIFK-AS1 chr2 121649320 121728563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA