exRNAdisease

Entry Detail

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General Information

Database ID: exR0373562 RNA Name: ACTA1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 229431245 End Site(bp): 229434098 External Links: ENSG00000143632

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand PRMT2 chr21 46635595 46665124 + ACTR1B chr2 97655939 97664044 - SLC38A10 chr17 81244811 81295547 - SNRPB2 chr20 16729961 16742564 + AL136454.1 chr1 192716132 192716653 + TARDBP chr1 11012344 11026420 + EIF5A chr17 7306999 7312463 + ATP5PD chr17 75038863 75046985 - LIX1L chr1 145933423 145958017 - SLC25A3 chr12 98593591 98606379 + FTL chr19 48965309 48966879 + RPL28 chr19 55385345 55403250 + POTEJ chr2 130611481 130658091 + AGGF1 chr5 77029251 77065234 + MCM2 chr3 127598410 127622436 + ERGIC3 chr20 35542021 35557634 + HEXA chr15 72340919 72376476 - UBE4B chr1 10032832 10181239 + ACTC1 chr15 34790230 34795549 - RPL23 chr17 38847860 38853764 - SEC61G chr7 54752250 54759974 - MRPS27 chr5 72219409 72320646 - RPL11 chr1 23691742 23696835 + RNPEP chr1 201982372 202006147 + PFN1 chr17 4945652 4949061 - PPIA chr7 44796680 44824564 + RPL36 chr19 5674947 5691875 + POLR3C chr1 145824088 145844402 + TNIP1 chr5 151029945 151093577 - CDC42SE1 chr1 151050971 151070325 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL022311.1 chr22 37876148 37895563 + AL355472.2 chr1 234357006 234365828 + AL359924.1 chr1 237862175 237928321 + LINC00847 chr5 180830326 180839742 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA