exRNAdisease

General Information

Database ID:

exR0373566

RNA Name:

ACTG1

RNA Type:

mRNA

Chromosome:

chr17

Starnd:

Coordinate:

Start Site(bp):

81509971

End Site(bp):

81523847

External Links:

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC006064.6	chr12	6556886	6607367	-
AATF	chr17	36948954	37056871	+
ALDOA	chr16	30064164	30070457	+
AK3	chr9	4709556	4742043	-
AFF1	chr4	86935002	87141054	+
AL603832.3	chr1	112702614	112711433	-
ALAS1	chr3	52198086	52214327	+
AC116366.3	chr5	132410832	132646079	+
ADGRL1	chr19	14147743	14206187	-
ABLIM1	chr10	114431113	114768061	-
AK4	chr1	65147549	65232145	+
AL136295.1	chr14	24189157	24213473	-
AL365205.1	chr6	41780349	41790141	+
AC010323.1	chr19	8308283	8321379	-
ACTL6A	chr3	179562886	179588407	+
AL049629.2	chr11	33698261	33722467	-
AC005943.1	chr19	1578339	1605445	-
ACTR2	chr2	65227753	65271253	+
ACTA1	chr1	229431245	229434098	-
ADD1	chr4	2843857	2930076	+
AK2	chr1	33007940	33080996	-
AKIRIN1	chr1	38991276	39006059	+
ACTB	chr7	5527148	5563784	-
ACAP1	chr17	7336529	7351477	+
AKAP12	chr6	151239967	151358559	+
AL590764.2	chrX	71103987	71111575	-
ACTG2	chr2	73892314	73919865	+
ACTC1	chr15	34790230	34795549	-
ADGRL3	chr4	61201258	62078335	+
ABHD16A	chr6	31686955	31703356	-

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-let-7d-5p	chr9	94178841	94178862	+
hsa-let-7f-5p	chrX	53557246	53557267	-
hsa-miR-155-5p	chr21	25573983	25574006	+
hsa-miR-636	chr17	76736466	76736488	-
hsa-miR-3648	chr21	8987026	8987046	+
hsa-miR-3654	chr7	133034860	133034878	-
hsa-miR-6125	chr12	62260418	62260437	+
hsa-miR-7703	chr14	24143489	24143511	-

circRNA targets:

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC091729.3	chr7	1160374	1165607	+
HLA-F-AS1	chr6	29726601	29749049	-
EPB41L4A-AS1	chr5	112160526	112164818	+
MALAT1	chr11	65497688	65506516	+
AC245014.3	chr1	145281116	145281462	+
AC020928.1	chr19	36773112	36777078	+
AC055811.1	chr17	17167946	17185554	-
ANKRD44-IT1	chr2	197250858	197302519	-
UBR5-AS1	chr8	102239394	102253750	+
SNHG14	chr15	24978583	25420336	+
SNHG8	chr4	118278709	118285316	+
AL136985.3	chr1	58715609	58771295	+
FOXD3-AS1	chr1	63320884	63324441	-
AC096649.2	chr2	175167904	175168522	+
ZFAS1	chr20	49278178	49299600	+
AC087239.1	chr12	25385670	25386241	-
AC135178.2	chr17	8318088	8318712	-
FAM111A-DT	chr11	59130133	59143015	-
AC012379.1	chr15	48783190	48784121	+
SNHG15	chr7	44983023	44986961	-
BISPR	chr19	17405686	17419324	+
AC002091.1	chr17	8967523	8976995	+
XIST	chrX	73820649	73852723	-
AC007996.1	chr18	26542971	26545791	-
AL139819.1	chr10	100335563	100346390	-
AL645728.1	chr1	1574102	1577075	+
AL355075.4	chr14	20343048	20343685	-
PSMB8-AS1	chr6	32844078	32846500	+
AC079949.1	chr12	127142029	127146532	-
AC021078.1	chr5	149494314	149504670	-

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference