exRNAdisease

Entry Detail

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General Information

Database ID: exR0373567 RNA Name: ACTG2 RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 73892314 End Site(bp): 73919865 External Links: ENSG00000163017

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand POTEE chr2 131218067 131265278 + ACTG1 chr17 81509971 81523847 - GADD45A chr1 67685201 67688334 + LSM11 chr5 157743712 157760709 + NGRN chr15 90265659 90278141 + MTRNR2L1 chr17 22523111 22524663 + CNN1 chr19 11538767 11550323 + BOLA1 chr1 149887890 149900798 + NBEAL1 chr2 203014879 203226378 + HNRNPA2B1 chr7 26173057 26201529 - LRPPRC chr2 43886224 43995989 - SNX17 chr2 27370496 27377535 + PPIG chr2 169584344 169641406 + SLC25A3 chr12 98593591 98606379 + SYPL1 chr7 106090503 106112576 - MCM3AP chr21 46235133 46286297 - POTEI chr2 130459455 130509707 - ACTA2 chr10 88935074 88991339 - COMT chr22 19941733 19969975 + RAB10 chr2 26034084 26137454 + ANP32A chr15 68778535 68820897 - ASB3 chr2 53532672 53860160 - PKM chr15 72199029 72231822 - CAMP chr3 48223347 48225491 + POTEJ chr2 130611481 130658091 + SDHA chr5 218241 257082 + HSP90B1 chr12 103930107 103953645 + WNT5B chr12 1529891 1647212 + ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC013269.1 chr2 130530275 130537182 + AL359924.1 chr1 237862175 237928321 + EIF1B-AS1 chr3 40061110 40309698 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA