exRNAdisease

Entry Detail

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General Information

Database ID: exR0373577 RNA Name: ACTN3 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 66546395 End Site(bp): 66563334 External Links: ENSG00000248746

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010422.3 chr19 12643831 12648397 - ACTN1 chr14 68874143 68979440 - ACTN4 chr19 38647649 38731589 + AKT2 chr19 40230317 40285536 - ATG101 chr12 52069246 52077494 + BCAR3 chr1 93561741 93847150 - C19orf48 chr19 50797704 50804929 - CDK18 chr1 205504595 205532793 + CIAO1 chr2 96266159 96274173 + CIRBP chr19 1259384 1274880 + GNAI1 chr7 79768028 80226181 + LPCAT3 chr12 6976185 7018477 - MCM7 chr7 100092728 100101940 - MGST3 chr1 165631213 165661796 + MON1B chr16 77190835 77202398 + NDUFA4 chr7 10931943 10940153 - ODC1 chr2 10439968 10448327 - PDGFA chr7 497258 520296 - PDZD4 chrX 153802166 153830565 - PTTG1IP chr21 44849585 44873903 - RPL27A chr11 8682788 8714759 + SBF2 chr11 9778667 10294207 - SFRP1 chr8 41261962 41309473 - SRCAP chr16 30698209 30741409 + SZRD1 chr1 16352575 16398145 + TIMM29 chr19 10928811 10933535 + VAT1 chr17 43014607 43025123 - VPS35 chr16 46656132 46689518 - WIPF3 chr7 29806486 29917066 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand LINC00847 chr5 180830326 180839742 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA