Entry Detail



General Information

Database ID:exR0373578
RNA Name:ACTN4
RNA Type:mRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):38647649End Site(bp):38731589
External Links:ENSG00000130402



Disease Information

Disease Name:Low Birth Weight
Disease Category:Other Diseases
MeSH ID:D007230
Type:Age Groups/Infant
Alias:Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights



Expression Detail

Created with Highcharts 7.0.1Expression value (z-scores)Chart context menuExpression boxplotCaseControl-3-2-1012
GEO ID:GSE29807
Description:Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:Disease vs Control
Case Disease Type:Low Birth Weight
Case Disease SubType:NA
Case Sample:Low Birth Weight
Control Sample:Normal
Number of Case:8
Number of Control:4
Number of Samples:12





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
NUP58
chr13
25301556
25349800
+
ID1
chr20
31605283
31606515
+
SAPCD1
chr6
31762996
31764851
+
SNRNP200
chr2
96274338
96321271
-
HSPA1A
chr6
31815543
31817946
+
MAN1C1
chr1
25617468
25786207
+
IREB2
chr15
78437431
78501453
+
CIB2
chr15
78104606
78131535
-
CRNKL1
chr20
20034368
20056046
-
TMEM158
chr3
45224466
45226287
-
AC020915.5
chr19
58228914
58315183
+
GCNT1
chr9
76419850
76651203
+
ATIC
chr2
215311956
215349773
+
VAPA
chr18
9914002
9960021
+
YWHAQ
chr2
9583967
9630997
-
CHD9
chr16
53055033
53329150
+
LRRD1
chr7
92141643
92179531
-
RAD23B
chr9
107283137
107332192
+
CFL1
chr11
65823022
65862026
-
STX10
chr19
13144058
13150383
-
PRRC2B
chr9
131373636
131500197
+
MTRNR2L8
chr11
10507894
10509186
-
HNRNPA2B1
chr7
26173057
26201529
-
BSPRY
chr9
113349541
113371233
+
ZFHX4
chr8
76681239
76867281
+
PTPN6
chr12
6946468
6961316
+
SET
chr9
128683424
128696400
+
NEDD8
chr14
24216857
24232367
-
PHLDB3
chr19
43474954
43504935
-
PKM
chr15
72199029
72231822
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-138-5p
chr16
56858527
56858549
+
hsa-miR-185-5p
chr22
20033153
20033174
+
hsa-miR-296-5p
chr20
58817661
58817681
-
hsa-miR-654-5p
chr14
101040234
101040255
+
hsa-miR-423-5p
chr17
30117095
30117117
+
hsa-miR-483-5p
chr11
2134181
2134202
-
hsa-miR-1286
chr22
20249145
20249165
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010997.3
chr10
75279726
75401246
-
AC016876.2
chr17
7581964
7584086
-
AC026304.1
chr3
143000907
143001467
-
AC132217.1
chr11
2129121
2129964
-
AC245014.3
chr1
145281116
145281462
+
AC245033.4
chr15
82533175
82540008
-
AD000090.1
chr19
35557956
35581954
+
AC008731.1
chr16
24803451
24819739
-
AC020915.1
chr19
58278966
58315197
+
AC093734.1
chr7
1508655
1509427
-
AC135178.2
chr17
8318088
8318712
-
AL355075.4
chr14
20343048
20343685
-
GHRLOS
chr3
10285754
10294903
+
LIMD1-AS1
chr3
45676369
45689200
-
RMRP
chr9
35657751
35658018
-
SLC9A3-AS1
chr5
473236
480884
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE29807
Sample Source:Cord Blood
Source Fraction:Umblical Cord Blood
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA