exRNAdisease

Entry Detail

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General Information

Database ID: exR0373584 RNA Name: ACTR3B RNA Type: mRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 152759749 End Site(bp): 152855378 External Links: ENSG00000133627

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ASH1L chr1 155335268 155562807 - RPL27A chr11 8682788 8714759 + AC010422.3 chr19 12643831 12648397 - CNIH4 chr1 224356858 224379459 + GAB2 chr11 78215293 78418348 - POU5F1 chr6 31164337 31180731 - SPOUT1 chr9 128819651 128829794 - RNF40 chr16 30761745 30776307 + TRIM14 chr9 98069275 98119222 - EEF2 chr19 3976056 3985463 - IPO7 chr11 9384652 9448127 + RPS12 chr6 132814569 132817564 + TRIM26 chr6 30184455 30213427 - SLC25A37 chr8 23528956 23575463 + HSP90AB1 chr6 44246166 44253888 + DAXX chr6 33318558 33323016 - PLS3 chrX 115561174 115650861 + MTFR2 chr6 136231024 136250335 - GSTK1 chr7 143244093 143270854 + SLC39A1 chr1 153959099 153968184 - EIF5A chr17 7306999 7312463 + SRSF4 chr1 29147743 29181900 - EIF5B chr2 99337371 99401326 + UBR5 chr8 102252273 102412759 - ZNF638 chr2 71276561 71435069 + STX7 chr6 132445867 132513198 - ALG10B chr12 38316762 38329721 + INCENP chr11 62123998 62153169 + EIF3L chr22 37848868 37889407 + RBBP7 chrX 16839283 16870414 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL022311.1 chr22 37876148 37895563 + LINC00963 chr9 129476946 129513687 + LINC01315 chr22 42364390 42369284 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA