exRNAdisease

Entry Detail

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General Information

Database ID: exR0373586 RNA Name: ACTR5 RNA Type: mRNA Chromosome: chr20 Starnd: + Coordinate: Start Site(bp): 38748460 End Site(bp): 38772520 External Links: ENSG00000101442

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ATP5PF chr21 25716503 25735673 - DPP3 chr11 66480013 66509657 + FUS chr16 31180110 31194871 + HNRNPA1 chr12 54280193 54287088 + IGF2 chr11 2129112 2141238 - MATR3 chr5 139273752 139331671 + MBTPS2 chrX 21839617 21885423 + NDUFA4 chr7 10931943 10940153 - OS9 chr12 57693955 57721557 + RAB1B chr11 66268590 66277492 + RAN chr12 130872037 130877678 + RPL8 chr8 144789765 144792587 - RPLP0 chr12 120196699 120201235 - SLC3A2 chr11 62856102 62888875 + STMN1 chr1 25884181 25906991 - TATDN1 chr8 124488485 124539458 - USP3 chr15 63504511 63594640 + ZNF618 chr9 113876282 114056591 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AP000233.2 chr21 25095022 25103670 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA