exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373609 RNA Name: ADAM17 RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 9488486 End Site(bp): 9556732 External Links: ENSG00000151694

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ITM2C chr2 230864639 230879248 + HUNK chr21 31873020 32044633 + TPGS2 chr18 36777647 36829216 - MOCS3 chr20 50958818 50963929 + ESCO2 chr8 27771949 27812640 + COMMD1 chr2 61888724 62147247 + TMX1 chr14 51240162 51257655 + NACA chr12 56712427 56731628 - ELOVL5 chr6 53267398 53349179 - KHDRBS1 chr1 32013868 32060850 + PSMA2 chr7 42916861 42932185 - PTMA chr2 231706895 231713541 + GATAD1 chr7 92447482 92460075 + SLC30A9 chr4 41990502 42090461 + SUGP2 chr19 18990888 19034023 - CCT5 chr5 10249929 10266389 + RNF44 chr5 176526712 176538025 - ATP5MC3 chr2 175176258 175184607 - G6PC3 chr17 44070735 44076344 + ZSCAN30 chr18 35251058 35290245 - MDN1 chr6 89642498 89819794 - GSTP1 chr11 67583742 67586656 + MARCKSL1 chr1 32333839 32336233 - PSMD2 chr3 184299198 184309050 + XPO6 chr16 28097979 28211920 - EIF3A chr10 119033670 119080823 - AL136454.1 chr1 192716132 192716653 + PIK3CA chr3 179148114 179240093 + COL11A2 chr6 33162681 33192499 - ZNF24 chr18 35332227 35345482 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand BX284668.2 chr1 16870945 16883659 + LINC01783 chr1 16533886 16536172 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA