exRNAdisease

Entry Detail

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General Information

Database ID: exR0373633 RNA Name: ADAMTS17 RNA Type: mRNA Chromosome: chr15 Starnd: - Coordinate: Start Site(bp): 99971437 End Site(bp): 100342005 External Links: ENSG00000140470

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022384.1 chr3 10249372 10285796 + ATXN7L3 chr17 44191805 44200113 - BRD4 chr19 15235519 15332545 - E2F2 chr1 23506438 23531233 - EIF4G3 chr1 20806292 21176888 - ERCC1 chr19 45407333 45478828 - FUBP3 chr9 130578965 130638352 + LAMA3 chr18 23689443 23956222 + LAMA5 chr20 62307955 62367312 - MAP1B chr5 72107234 72209565 + NCOR1 chr17 16029157 16218185 - PKN1 chr19 14433053 14471867 + PTPRU chr1 29236516 29326813 + SELENOS chr15 101270817 101277500 - TATDN2 chr3 10248023 10281218 + TICRR chr15 89575469 89631056 + TMEM151B chr6 44270450 44307506 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA