exRNAdisease

Entry Detail

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General Information

Database ID: exR0373636 RNA Name: ADAMTS2 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 179110853 End Site(bp): 179345461 External Links: ENSG00000087116

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand BLOC1S5-TXNDC5 chr6 7881522 8064364 - DHRS11 chr17 36591879 36600804 + ECI1 chr16 2239402 2252300 - GYG1 chr3 148991341 149027668 + IGF2 chr11 2129112 2141238 - INS-IGF2 chr11 2132538 2161209 - KHDRBS1 chr1 32013868 32060850 + MARCKSL1 chr1 32333839 32336233 - PAFAH1B3 chr19 42297033 42303546 - TOP2A chr17 40388525 40417896 - TXNDC5 chr6 7881517 7910788 - ZNF703 chr8 37695782 37700019 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand LINC00910 chr17 43338741 43389199 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA