exRNAdisease

Entry Detail

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General Information

Database ID: exR0373642 RNA Name: ADAMTS7 RNA Type: mRNA Chromosome: chr15 Starnd: - Coordinate: Start Site(bp): 78759206 End Site(bp): 78811464 External Links: ENSG00000136378

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CCT7 chr2 73233420 73253021 + CHD4 chr12 6570082 6614524 - CMTM3 chr16 66603874 66613892 + EEF2 chr19 3976056 3985463 - ENOPH1 chr4 82430590 82461177 + FADS1 chr11 61799627 61829318 - GNAI2 chr3 50226292 50259362 + HEY1 chr8 79764010 79767857 - HSP90AB1 chr6 44246166 44253888 + LSS chr21 46188141 46228824 - MEIS3 chr19 47403124 47419527 - MORF4L1 chr15 78810487 78898139 + NXN chr17 799310 979776 - OLFML2A chr9 124777133 124814885 + PABPC1 chr8 100685816 100722809 - POU5F1 chr6 31164337 31180731 - PPP1R13L chr19 45379638 45406349 - SMG1 chr16 18804853 18926454 - SNX17 chr2 27370496 27377535 + TPM3 chr1 154155304 154194648 - TRAF7 chr16 2155698 2178129 + WWC2 chr4 183099257 183320777 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand SNHG15 chr7 44983023 44986961 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA