exRNAdisease

Entry Detail

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General Information

Database ID: exR0373650 RNA Name: ADAP1 RNA Type: mRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 897900 End Site(bp): 955407 External Links: ENSG00000105963

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand COX19 chr7 898778 975549 - CYC1 chr8 144095039 144097525 + ERC1 chr12 990509 1495933 + HNRNPD chr4 82352498 82374503 - ITGAV chr2 186590056 186680901 + JMJD8 chr16 681670 684528 - KDM4B chr19 4969113 5153598 + MCRIP2 chr16 636817 648474 + NUP93 chr16 56730118 56850286 + PHLDA1 chr12 76025447 76033932 - RAC1 chr7 6374527 6403967 + RPS20 chr8 56067295 56074581 - TIMM9 chr14 58408495 58427531 - TMEM165 chr4 55395957 55453397 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA