exRNAdisease

Entry Detail

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General Information

Database ID: exR0373653 RNA Name: ADARB1 RNA Type: mRNA Chromosome: chr21 Starnd: + Coordinate: Start Site(bp): 45073853 End Site(bp): 45226560 External Links: ENSG00000197381

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand UBB chr17 16380798 16382745 + LBHD1 chr11 62662817 62672255 - TNPO2 chr19 12699194 12724011 - TXNRD2 chr22 19875517 19941820 - TMEM131 chr2 97756333 97995948 - EXOSC10 chr1 11066618 11099869 - IFT140 chr16 1510427 1612072 - ZFR chr5 32354350 32444740 - RPL37A chr2 216498825 216579180 + RAC2 chr22 37225270 37244448 - IGF1R chr15 98648539 98964530 + CAD chr2 27217369 27243943 + WDR45B chr17 82614562 82648553 - HMGA1 chr6 34236873 34246231 + SLC9A3R1 chr17 74748628 74769353 + PSMA4 chr15 78540405 78552417 + MYCN chr2 15940550 15947007 + MAPK12 chr22 50245450 50261716 - RPS14 chr5 150442635 150449739 - PIP4K2C chr12 57591174 57603418 + PIP5K1A chr1 151197949 151249536 + SYNJ2BP-COX16 chr14 70326064 70417074 - AC120114.4 chr16 29817239 29830627 + RANBP1 chr22 20115938 20127355 + COASY chr17 42561467 42566277 + HNRNPU chr1 244840638 244864560 - GFOD2 chr16 67674531 67719339 - SPON1 chr11 13962723 14268133 + COX16 chr14 70325081 70416984 - AUTS2 chr7 69598296 70793506 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-17-5p chr13 91350618 91350640 + hsa-miR-20a-5p chr13 91351072 91351094 + hsa-miR-93-5p chr7 100093815 100093837 - hsa-miR-106a-5p chrX 134170244 134170266 - hsa-miR-301a-3p chr17 59151149 59151171 - hsa-miR-20b-5p chrX 134169850 134169872 - hsa-miR-512-3p chr19 53666729 53666750 + hsa-miR-454-3p chr17 59137787 59137809 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand SNHG7 chr9 136721366 136728184 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA