exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373655 RNA Name: ADAT1 RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 75596981 End Site(bp): 75623300 External Links: ENSG00000065457

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand BFAR chr16 14632931 14669236 + CD22 chr19 35319261 35347361 + CD48 chr1 160678746 160711831 - CFDP1 chr16 75293698 75433503 - CREB3L2 chr7 137874979 138002086 - FUT11 chr10 73772276 73780251 + HNRNPM chr19 8444767 8489114 + IGF2 chr11 2129112 2141238 - KCNC3 chr19 50311937 50333515 - KMT2B chr19 35717973 35738878 + MAEA chr4 1289887 1340147 + METRN chr16 715118 719655 + NME1-NME2 chr17 51153590 51171744 + NME2 chr17 51165435 51171747 + NT5DC2 chr3 52524385 52535054 - PAK1 chr11 77321707 77474635 - RPP14 chr3 58306247 58324695 + STT3A chr11 125591712 125625215 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC025287.1 chr16 75541399 75608445 - KCNQ1OT1 chr11 2608328 2699994 - MALAT1 chr11 65497688 65506516 + ZNF710-AS1 chr15 90074512 90082207 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA